Publications of Matthias Mann

Wuyts, S.; Alves, R.; Zimmermann-Kogadeeva, M.; Nishijima, S.; Blasche, S.; Driessen, M.; Geyer, P. E.; Hercog, R.; Kartal, E.; Maier, L. et al.; Müller, J. B.; Santamarina, S. G.; Schmidt, T. S. B.; Sevin, D. C.; Telzerow, A.; Treit, P. V.; Wenzel, T.; Typas, A.; Patil, K. R.; Mann, M.; Kuhn, M.; Bork, P.: Consistency across multi-omics layers in a drug-perturbed gut microbial community. Molecular Systems Biology 19 (9), e11525 (2023)

Tretter, C.; Kraetzig, N. d. A.; Pecoraro, M.; Lange, S.; Seifert, P.; von Frankenberg, C.; Untch, J.; Zuleger, G.; Wilhelm, M.; Zolg, D. P. P. et al.; Dreyer, F. S. S.; Braeunlein, E.; Engleitner, T.; Uhrig, S.; Boxberg, M.; Steiger, K.; Slotta-Huspenina, J.; Ochsenreither, S.; von Bubnoff, N.; Bauer, S.; Boerries, M.; Jost, P. J. J.; Schenck, K.; Dresing, I.; Bassermann, F.; Friess, H.; Reim, D.; Gruetzmann, K.; Pfuetze, K.; Klink, B.; Schroeck, E.; Haller, B.; Kuster, B.; Mann, M.; Weichert, W.; Froehling, S.; Rad, R.; Hiltensperger, M.; Krackhardt, A. M. M.: Proteogenomic analysis reveals RNA as a source for tumor-agnostic neoantigen identification. Nature Communications 14 (1), 4632 (2023)

Polychronidou, M.; Hou, J.; Babu, M. M.; Liberali, P.; Amit, I.; Deplancke, B.; Lahav, G.; Itzkovitz, S.; Mann, M.; Saez-Rodriguez, J. et al.; Theis, F.; Eils, R.: Single-cell biology: What does the future hold? Molecular Systems Biology 19 (7), e11799 (2023)

Bahrami, E.; Schmid, J. P.; Jurinovic, V.; Becker, M.; Wirth, A.-K.; Ludwig, R.; Kreissig, S.; Duque Angel, T. V.; Amend, D.; Hunt, K. et al.; Oellinger, R.; Rad, R.; Frenz, J. M.; Solovey, M.; Ziemann, F.; Mann, M.; Vick, B.; Wichmann, C.; Herold, T.; Jayavelu, A. K.; Jeremias, I.: Combined proteomics and CRISPR-Cas9 screens in PDX identify ADAM10 as essential for leukemia in vivo. Molecular Cancer 22 (1), 107 (2023)

Ammar, C.; Schessner, J. P.; Willems, S.; Michaelis, A. C.; Mann, M.: Accurate Label-Free Quantification by directLFQ to Compare Unlimited Numbers of Proteomes. Molecular & Cellular Proteomics 22 (7), 100581 (2023)

Bader, J. M.; Albrecht, V.; Mann, M.: MS-Based Proteomics of Body Fluids: The End of the Beginning. Molecular & Cellular Proteomics 22 (7), 100577 (2023)

Lobentanzer, S.; Aloy, P.; Baumbach, J.; Bohar, B.; Carey, V. J.; Charoentong, P.; Danhauser, K.; Dogan, T.; Dreo, J.; Dunham, I. et al.; Farr, E.; Fernandez-Torras, A.; Gyori, B. M.; Hartung, M.; Hoyt, C. T.; Klein, C.; Korcsmaros, T.; Maier, A.; Mann, M.; Ochoa, D.; Pareja-Lorente, E.; Popp, F.; Preusse, M.; Probul, N.; Schwikowski, B.; Sen, B.; Strauss, M. T.; Turei, D.; Ulusoy, E.; Waltemath, D.; Wodke, J. A. H.; Saez-Rodriguez, J.: Democratizing knowledge representation with BioCypher. Nature Biotechnology 41, pp. 1056 - 1059 (2023)

Shalon, D.; Culver, R. N.; Grembi, J. A.; Folz, J.; Treit, P. V.; Shi, H.; Rosenberger, F. A.; Dethlefsen, L.; Meng, X.; Yaffe, E. et al.; Aranda-Diaz, A.; Geyer, P. E.; Mueller-Reif, J. B.; Spencer, S.; Patterson, A. D.; Triadafilopoulos, G.; Holmes, S. P.; Mann, M.; Fiehn, O.; Relman, D. A.; Huang, K. C.: Profiling the human intestinal environment under physiological conditions. Nature 617 (7961), pp. 581 - 591 (2023)

Baek, K.; Scott, D. C.; Henneberg, L. T.; King, M. T.; Mann, M.; Schulman, B. A.: Systemwide disassembly and assembly of SCF ubiquitin ligase complexes. Cell 186 (9), pp. 1895 - 1911 (2023)

Ugur, E.; de la Porte, A.; Qin, W.; Bultmann, S.; Ivanova, A.; Drukker, M.; Mann, M.; Wierer, M.; Leonhardt, H.: Comprehensive chromatin proteomics resolves functional phases of pluripotency and identifies changes in regulatory components. Nucleic Acids Research 51 (6), pp. 2671 - 2690 (2023)

Rosenberger, F. A.; Thielert, M.; Mann, M.: Making single-cell proteomics biologically relevant. Nature Methods 20 (3), pp. 320 - 323 (2023)

Nagao, H.; Cai, W.; Brandao, B. B.; Wewer Albrechtsen, N. J.; Steger, M.; Gattu, A. K.; Pan, H.; Dreyfuss, J. M.; Wunderlich, F. T.; Mann, M. et al.; Kahn, C. R.: Leucine-973 is a crucial residue differentiating insulin and IGF-1 receptor signaling. The Journal of Clinical Investigation 133 (4), e161472 (2023)

Bernhardt, A. M.; Tiedt, S.; Teupser, D.; Dichgans, M.; Meyer, B.; Gempt, J.; Kuhn, P.-H.; Simons, M.; Palleis, C.; Weidinger, E. et al.; Nuebling, G.; Holdt, L.; Hoenikl, L.; Gasperi, C.; Giesbertz, P.; Mueller, S. A.; Breimann, S.; Lichtenthaler, S. F.; Kuster, B.; Mann, M.; Imhof, A.; Barth, T.; Hauck, S. M.; Zetterberg, H.; Otto, M.; Weichert, W.; Hemmer, B.; Levin, J.: A unified classification approach rating clinical utility of protein biomarkers across neurologic diseases. EBioMedicine 89, 104456 (2023)

Murgia, M.; Brocca, L.; Monti, E.; Franchi, M. V. V.; Zwiebel, M.; Steigerwald, S.; Giacomello, E.; Sartori, R.; Zampieri, S.; Capovilla, G. et al.; Gasparini, M.; Biolo, G.; Sandri, M.; Mann, M.; Narici, M. V. V.: Plasma proteome profiling of healthy subjects undergoing bed rest reveals unloading-dependent changes linked to muscle atrophy. Journal of Cachexia, Sarcopenia and Muscle 14 (1), pp. 439 - 451 (2023)

Skowronek, P.; Krohs, F.; Lubeck, M.; Wallmann, G.; Itang, E. C. M.; Koval, P.; Wahle, M.; Thielert, M.; Meier, F.; Willems, S. et al.; Raether, O.; Mann, M.: Synchro-PASEF Allows Precursor-Specific Fragment Ion Extraction and Interference Removal in Data-Independent Acquisition. Molecular & Cellular Proteomics 22 (2), 100489 (2023)

Herchenroether, A.; Gossen, S.; Friedrich, T.; Reim, A.; Daus, N.; Diegmueller, F.; Leers, J.; Sani, H. M.; Gerstner, S.; Schwarz, L. et al.; Stellmacher, I.; Szymkowiak, L. V.; Nist, A.; Stiewe, T.; Borggrefe, T.; Mann, M.; Mackay, J. P.; Bartkuhn, M.; Borchers, A.; Lan, J.; Hake, S. B.: The H2A.Z and NuRD associated protein HMG20A controls early head and heart developmental transcription programs. Nature Communications 14 (1), 472 (2023)

Bader, J. M.; Deigendesch, N.; Misch, M.; Mann, M.; Koch, A.; Meissner, F.: Proteomics separates adult-type diffuse high- grade gliomas in metabolic subgroups independent of 1p/19q codeletion and across IDH mutational status. Cell Reports Medicine 4 (1), 100877 (2023)

Nagao, H.; Jayavelu, A. K.; Cai, W.; Pan, H.; Dreyfuss, J. M.; Batista, T. M.; Brandão, B. B.; Mann, M.; Kahn, C. R.: Unique ligand and kinase-independent roles of the insulin receptor in regulation of cell cycle, senescence and apoptosis. Nature Communications 14, 57 (2023)

Frank, D.; Patnana, P. K.; Vorwerk, J.; Mao, L.; Gopal, L. M.; Jung, N.; Hennig, T.; Ruhnke, L.; Frenz, J. M.; Kuppusamy, M. et al.; Autry, R.; Wei, L.; Sun, K.; Ahmed, H. M. M.; Kuenstner, A.; Busch, H.; Mueller, H.; Hutter, S.; Hoermann, G.; Liu, L.; Xie, X.; Al-Matary, Y.; Nimmagadda, S. C.; Cano, F. C.; Heuser, M.; Thol, F.; Goehring, G.; Steinemann, D.; Thomale, J.; Leitner, T.; Fischer, A.; Rad, R.; Roellig, C.; Altmann, H.; Kunadt, D.; Berdel, W. E.; Hueve, J.; Neumann, F.; Klingauf, J.; Calderon, V.; Opalka, B.; Duehrsen, U.; Rosenbauer, F.; Dugas, M.; Varghese, J.; Reinhardt, H. C.; von Bubnoff, N.; Moroy, T.; Lenz, G.; Batcha, A. M. N.; Giorgi, M.; Selvam, M.; Wang, E.; Mcweeney, S. K.; Tyner, J. W.; Stoelzel, F.; Mann, M.; Jayavelu, A. K.; Khandanpour, C.: Germ line variant GFI1-36N affects DNA repair and sensitizes AML cells to DNA damage and repair therapy. Blood 142 (25), pp. 2175 - 2191 (2023)

Salehi, S.; Zare, A.; Prezza, G.; Bader, J. M.; Schneider, C.; Fischer, U.; Meissner, F.; Mann, M.; Briese, M.; Sendtner, M.: Cytosolic Ptbp2 modulates axon growth in motoneurons through axonal localization and translation of Hnrnpr. Nature Communications 14 (1), 4158 (2023)