Student Publications

Reimão-Pinto, M. M.; Behrens, A.; Forcelloni, S.; Fröhlich, K.; Kaya, S.; Nedialkova, D. D.: The dynamics and functional impact of tRNA repertoires during early embryogenesis in zebrafish. The EMBO Journal 43, pp. 5747 - 5779 (2024)

Nordmann, T. M.; Anderton, H.; Hasegawa, A.; Schweizer, L.; Zhang, P.; Stadler, P.-C.; Sinha, A.; Metousis, A.; Rosenberger, F. A.; Zwiebel, M. et al.; Satoh, T. K.; Anzengruber, F.; Strauss, M. T.; Tanzer, M. C.; Saito, Y.; Gong, T.; Thielert, M.; Kimura, H.; Silke, N.; Rodriguez, E.; Restivo, G.; Nguyen, H. H.; Gross, A.; Feldmeyer, L.; Joerg, L.; Levesque, M. P.; Murray, P. J.; Ingen-Housz-Oro, S.; Mund, A.; Abe, R.; Silke, J.; Ji, C.; French, L. E.; Mann, M.: Spatial proteomics identifies JAKi as treatment for a lethal skin disease. Nature (2024)

Kögel, A.; Keidel, A.; Loukeri, M.-J.; Kuhn, C. C.; Langer, L. M.; Schäfer, I. B.; Conti, E.: Structural basis of mRNA decay by the human exosome–ribosome supercomplex. Nature 635, pp. 237 - 242 (2024)

Huang, J.; Jaekel, A.; van den Boom, J.; Podlesainski, D.; Elnaggar, M.; Heuer-Jungemann, A.; Kaiser, M.; Meyer, H.; Sacca, B.: A modular DNA origami nanocompartment for engineering a cell-free, protein unfolding and degradation pathway. Nature Nanotechnology 19, pp. 1521 - 1531 (2024)

Weickert, P.; Dürauer, S.; Götz, M. J.; Li, H.-Y.; Stingele, J.: Electro-elution-based purification of covalent DNA–protein cross-links. Nature Protocols 19, pp. 2891 - 2914 (2024)

Yu, Z.; Baptist, A. V.; Reinhardt, S. C. M.; Bertosin, E.; Dekker, C.; Jungmann, R.; Heuer-Jungemann, A.; Caneva, S.: Compliant DNA origami nanoactuators as size-selective nanopores. Advanced Materials 36 (39), 2405104 (2024)

Hellmeier, J.; Strauss, S.; Xu, S.; Masullo, L. A.; Unterauer, E. M.; Kowalewski, R.; Jungmann, R.: Quantification of absolute labeling efficiency at the single-protein level. Nature Methods 21 (9), pp. 1702 - 1707 (2024)

Schiotz, O. H.; Kaiser, C. J. O.; Klumpe, S.; Morado, D. R.; Poege, M.; Schneider, J.; Beck, F.; Klebl, D. P.; Thompson, C.; Plitzko, J. M.: Serial Lift-Out: Sampling the molecular anatomy of whole organisms. Nature Methods 21 (9), pp. 1684 - 1692 (2024)

Steen, P. R.; Unterauer, E. M.; Masullo, L. A.; Kwon, J.; Perovic, A.; Jevdokimenko, K.; Opazo, F.; Fornasiero, E. F.; Jungmann, R.: The DNA-PAINT palette: A comprehensive performance analysis of fluorescent dyes. Nature Methods 21 (9), pp. 1755 - 1762 (2024)

Massacci, G.; Venafra, V.; Zwiebel, M.; Wahle, M.; Cerroni, R.; Bissacco, J.; Perfetto, L.; Michienzi, V.; Stefani, A.; Mercuri, N. B. et al.; Schirinzi, T.; Sacco, F.: Stage-dependent phosphoproteome remodeling of Parkinson's disease blood cells. Neurobiology of Disease 200, 106622 (2024)

Jayakrishnan, M.; Havlová, M.; Veverka, V.; Regnard, C.; Becker, P.: Genomic context-dependent histone H3K36 methylation by three Drosophila methyltransferases and implications for dedicated chromatin readers. Nucleic Acids Research 52 (13), pp. 7627 - 7649 (2024)

Bérouti, M.; Lammens, K.; Heiss, M.; Hansbauer, L.; Bauernfried, S.; Stöckl, J.; Pinci, F.; Piseddu, I.; Greulich, W.; Wang, M. et al.; Jung, C.; Fröhlich, T.; Carell, T.; Hopfner, K.-P.; Hornung, V.: Lysosomal endonuclease RNase T2 and PLD exonucleases cooperatively generate RNA ligands for TLR7 activation. Immunity 57 (7), pp. 1482 - 1496 (2024)

Horn-Ghetko, D.; Hopf, L. V. M.; Tripathi-Giesgen, I.; Du, J.; Kostrhon, S.; Tung Vu, D.; Beier, V.; Steigenberger, B.; Prabu, J. R.; Stier, L. et al.; Bruss, E. M.; Mann, M.; Xiong, Y.; Schulman, B. A.: Noncanonical assembly, neddylation and chimeric cullin-RING/RBR ubiquitylation by the 1.8 MDa CUL9 E3 ligase complex. Nature Structural & Molecular Biology 31, pp. 1083 - 1094 (2024)

Lyu, X.; Fan, B.; Hüser, M.; Hartout, P.; Gumbsch, T.; Faltys, M.; Merz, T. M.; Rätsch, G.; Borgwardt, K.: An empirical study on KDIGO-defined acute kidney injury prediction in the intensive care unit. Bioinformatics 40 (Suppl. 1), pp. i247 - i256 (2024)

Gavrilovic, S.; Brueggenthies, G. A.; Weck, J. M.; Heuer-Jungemann, A.; Schwille, P.: Protein-assisted large-scale assembly and differential patterning of DNA origami lattices. Small 20 (24), 2309680 (2024)

Langer, L. M.; Kurscheidt, K.; Basquin, J.; Bonneau, F.; Iermak, I.; Basquin, C.; Conti, E.: UPF1 helicase orchestrates mutually exclusive interactions with the SMG6 endonuclease and UPF2. Nucleic Acids Research 52 (10), pp. 6036 - 6048 (2024)

Yi, S. A.; Sepic, S.; Schulman, B. A.; Ordureau, A.; An, H.: mTORC1-CTLH E3 ligase regulates the degradation of HMG-CoA synthase 1 through the Pro/N-degron pathway. Molecular Cell 84 (11), pp. 2166 - 2184 (2024)

Gross, A.; Müller, J.; Chrustowicz, J.; Strasser, A.; Gottemukkala, K. V.; Sherpa, D.; Schulman, B. A.; Murray, P. J.; Alpi, A. F.: Skraban-Deardorff intellectual disability syndrome-associated mutations in WDR26 impair CTLH E3 complex assembly. FEBS Letters 598 (9), pp. 978 - 994 (2024)

Kobayashi, W.; Sappler, A. H.; Bollschweiler, D.; Kümmecke, M.; Basquin, J.; Arslantas, E. N.; Ruangroengkulrith, S.; Hornberger, R.; Duderstadt, K.; Tachibana, K.: Nucleosome-bound NR5A2 structure reveals pioneer factor mechanism by DNA minor groove anchor competition. Nature Structural & Molecular Biology 31, pp. 757 - 766 (2024)

Sommer, S.; Schmutz, M.; Hildebrand, K.; Schiwitza, A.; Benedikt, S.; Eberle, M.; Moegele, T.; Sultan, A.; Reichl, L.; Campillo, M. et al.; Uhrmacher, L.; Nikolic, A. A.; Bundschuh, R.; Lapa, C.; Kuhlen, M.; Dintner, S.; Langer, A.; Maerkl, B.; Wendler, T.; Tehlan, K.; Kroencke, T.; Wahle, M.; Mann, M.; Casadei, N.; Pogoda, M.; Hummler, S.; Sax, I.; Schlesner, M.; Kubuschok, B.; Trepel, M.; Claus, R.: Concept and feasibility of the Augsburg longitudinal plasma study (ALPS) - A prospective trial for comprehensive liquid biopsy-based longitudinal monitoring of solid cancer patients. Journal of Laboratory Medicine 48 (3), pp. 107 - 119 (2024)