Student Publications

Hansen, K. G.; Baxter-Koenigs, A.; Weiss, C. A. M.; Mcshane, E.; Churchman, L. S.: Transcription arrest induces formation of RNA granules in mitochondria. Life science alliance 8 (9), e202403082 (2025)

Huber, L.; Kucera, T.; Hoellerer, S.; Borgwardt, K.; Panke, S.; Jeschek, M.: Data-driven Protease Engineering by DNA-Recording and Epistasis-aware Machine Learning. Nature Communications 16, 5466 (2025)

Honsa, M.; Pachmayr, I.; Heinze, L.; Bas, L.; Masullo, L. A.; Kwon, J.; Perovic, A.; Schulman, B. A.; Jungmann, R.: Imaging Ligand-Receptor Interactions at Single-Protein Resolution with DNA-PAINT. Small Methods 9 (6), 2401799 (2025)

Weck, J. M.; Nair, R.; Kesici, M.-Z.; Shang, X.; Gavrilovic, S.; Monzel, C.; Heuer-Jungemann, A.: Effects of DNA Origami-Based Nanoagent Design on Apoptosis Induction in a Large 3D Cancer Spheroid Model. Small 21 (24), 2502490 (2025)

Rosenberger, F. A.; Mädler, S. C.; Thorhauge, K. H.; Steigerwald, S.; Fromme, M.; Lebedev, M.; Weiss, C. A. M.; Oeller, M.; Wahle, M.; Metousis, A. et al.; Zwiebel, M.; Schmacke, N. A.; Detlefsen, S.; Boor, P.; Fabian, O.; Frankova, S.; Krag, A.; Strnad, P.; Mann, M.: Deep Visual Proteomics maps proteotoxicity in a genetic liver disease. Nature 642 (8067), pp. 484 - 491 (2025)

Skowronek, P.; Wallmann, G.; Wahle, M.; Willems, S.; Mann, M.: An accessible workflow for high-sensitivity proteomics using parallel accumulation–serial fragmentation (PASEF). Nature Protocols 20, pp. 1700 - 1729 (2025)

Speidel, J. D.; Yu, K.; Böttcher, R. T.: Phosphorylation of SNX17 impedes activation of Retriever-mediated sorting. Journal of Biological Chemistry 301 (6), 110222 (2025)

Pellizzoni, P.; Pietracaprina, A.; Pucci, G.: Fully Dynamic Clustering and Diversity Maximization in Doubling Metrics. ACM Transactions on Knowledge Discovery from Data 19 (4), 93 (2025)

Masullo, L. A.; Kowalewski, R.; Honsa, M.; Heinze, L.; Xu, S.; Steen, P. R.; Grabmayr, H.; Baudrexel, I.; Reinhardt, S. C. M.; Perovic, A. et al.; Kwon, J.; Oxley, E. P.; Dickins, R. A.; Bastings, M. M. C.; Parish, I. A.; Jungmann, R.: Spatial and stoichiometric in situ analysis of biomolecular oligomerization at single-protein resolution. Nature Communications 16 (1), 4202 (2025)

Klumpe, S.; Senti, K. A.; Beck, F.; Sachweh, J.; Hampoelz, B.; Ronchi, P.; Oorschot, V.; Brandstetter, M.; Yeroslaviz, A.; Briggs, J. A. G. et al.; Brennecke, J.; Beck, M.; Plitzko, J. M.: In-cell structure and snapshots of copia retrotransposons in intact tissue by cryoelectron tomography. Cell 188 (8), pp. 2094 - 2110.e18 (2025)

Klumpe, S.; Senti, K. A.; Beck, F.; Sachweh, J.; Hampoelz, B.; Ronchi, P.; Oorschot, V.; Brandstetter, M.; Yeroslaviz, A.; Briggs, J. A. G. et al.; Brennecke, J.; Beck, M.; Plitzko, J. M.: In-cell structure and snapshots of copia retrotransposons in intact tissue by cryo-ET. Cell 188 (8), pp. 2094 - 2110 (2025)

Del-Pozo-Rodriguez, J.; Tilly, P.; Lecat, R.; Vaca, H. R.; Mosser, L.; Brivio, E.; Balla, T.; Gomes, M. V.; Ramos-Morales, E.; Schwaller, N. et al.; Salinas-Giegé, T.; VanNoy, G.; England, E. M.; Kern Lovgren, A.; O’Leary, M.; Chopra, M.; Ojeda, N. M.; Toosi, M. B.; Eslahi, A.; Alerasool, M.; Mojarrad, M.; Pais, L. S.; Yeh, R. C.; Gable, D. L.; Hashem, M. O.; Abdulwahab, F.; Rakiz Alqurashi, M.; Sbeih, L. Z.; Adas Blanco, O. A.; Khater, R. A.; Oprea, G.; Rad, A.; Alzaidan, H.; Aldhalaan, H.; Tous, E.; Alsagheir, A.; Alowain, M.; Tamim, A.; Alfayez, K.; Alhashem, A.; Alnuzha, A.; Kamel, M.; Al-Awam, B. S.; Elnaggar, W.; Almenabawy, N.; O'Donnell-Luria, A.; Neil, J. E.; Gleeson, J. G.; Walsh, C. A.; Alkuraya, F. S.; AlAbdi, L.; Elkhateeb, N.; Selim, L.; Srivastava, S.; Nedialkova, D. D.; Drouard, L.; Romier, C.; Bayam, E.; Godin, J. D.: ADAT3variants disrupt the activity of the ADAT tRNA deaminase complex and impair neuronal migration. Brain (2025)

Kabatnik, S.; Zheng, X.; Pappas, G.; Steigerwald, S.; Padula, M. P.; Mann, M.: Deep visual proteomics reveals DNA replication stress as a hallmark of signet ring cell carcinoma. npi Precision Oncology 9 (1), 37 (2025)

Guinart, A.; Doellerer, D.; Qutbuddin, Y.; Zivkovic, H.; Branca, C.; Hrebik, D.; Schwille, P.; Feringa, B. L.: Photoswitchable Molecular Motor Phospholipid: Synthesis, Characterization, and Integration into Lipid Vesicles. Langmuir (2025)

Li, X.; Wang, J.; Baptist, A. V.; Wu, W.; Heuer-Jungemann, A.; Zhang, T.: Crystalline Assemblies of DNA Nanostructures and their Functional Properties. Angewandte Chemie International Edition 64 (3), e202416948 (2025)

Pegoraro, C.; Karpova, E.; Qutbuddin, Y.; Sanchis, E. M.; Dimitrijevs, P.; Huck-Iriart, C.; Gavrilovic, S.; Arsenyan, P.; Schwille, P.; Felip-Leon, C. et al.; Duro-Castano, A.; Conejos-Sanchez, I.; Vicent, M. J.: Polyproline-Polyornithine Diblock Copolymers with Inherent Mitochondria Tropism. Advanced Materials, 2411595 (2025)

Aunstrup Larsen, J.; van Gils, J. H. M.; Ray, S.; Dickmanns, M.; Wang, S.; Sadek, A.; Mohammad-Beigi, H.; Zanganeh, M.; Abeln, S.; Buell, A. K.: Probing the effect of the disordered flank regions on amyloid fibril growth and proliferation. RSC Advances 15 (26), pp. 20668 - 20681 (2025)

Frohn, B. P.; Kohyama, S.; Schwille, P.: Protein design and optimization for synthetic cells. Nature Reviews Bioengineering (2025)

Itang, E. C. M.; Albrecht, V.; Schebesta, A.-S.; Thielert, M.; Lanz, A.-L.; Danhauser, K.; Jin, J.; Prell, T.; Strobel, S.; Klein, C. et al.; Mann, M.; Pangratz-Fuehrer, S.; Mueller-Reif, J. B.: Ontology-guided clustering enables proteomic analysis of rare pediatric disorders. Embo Molecular Medicine (2025)

Maiwald, S. A.; Schneider, L. A.; Vollrath, R.; Liwocha, J.; Maletic, M. D.; Swatek, K. N.; Mulder, M. P. C.; Schulman, B. A.: TRIP12 structures reveal HECT E3 formation of K29 linkages and branched ubiquitin chains. Nature Structural and Molecular Biology (2025)