Student Publications

Klumpe, S.; Senti, K. A.; Beck, F.; Sachweh, J.; Hampoelz, B.; Ronchi, P.; Oorschot, V.; Brandstetter, M.; Yeroslaviz, A.; Briggs, J. A. G. et al.; Brennecke, J.; Beck, M.; Plitzko, J. M.: In-cell structure and snapshots of copia retrotransposons in intact tissue by cryoelectron tomography. Cell 188 (8), pp. 2094 - 2110.e18 (2025)

Kabatnik, S.; Zheng, X.; Pappas, G.; Steigerwald, S.; Padula, M. P.; Mann, M.: Deep visual proteomics reveals DNA replication stress as a hallmark of signet ring cell carcinoma. npi Precision Oncology 9 (1), 37 (2025)

Guinart, A.; Doellerer, D.; Qutbuddin, Y.; Zivkovic, H.; Branca, C.; Hrebik, D.; Schwille, P.; Feringa, B. L.: Photoswitchable Molecular Motor Phospholipid: Synthesis, Characterization, and Integration into Lipid Vesicles. Langmuir (2025)

Skowronek, P.; Wallmann, G.; Wahle, M.; Willems, S.; Mann, M.: An accessible workflow for high-sensitivity proteomics using parallel accumulation–serial fragmentation (PASEF). Nature Protocols (2025)

Li, X.; Wang, J.; Baptist, A. V.; Wu, W.; Heuer-Jungemann, A.; Zhang, T.: Crystalline Assemblies of DNA Nanostructures and their Functional Properties. Angewandte Chemie International Edition 64 (3), e202416948 (2025)

Pegoraro, C.; Karpova, E.; Qutbuddin, Y.; Sanchis, E. M.; Dimitrijevs, P.; Huck-Iriart, C.; Gavrilovic, S.; Arsenyan, P.; Schwille, P.; Felip-Leon, C. et al.; Duro-Castano, A.; Conejos-Sanchez, I.; Vicent, M. J.: Polyproline-Polyornithine Diblock Copolymers with Inherent Mitochondria Tropism. Advanced Materials, 2411595 (2025)

Honsa, M.; Pachmayr, I.; Heinze, L.; Bas, L.; Masullo, L. A.; Kwon, J.; Perovic, A.; Schulman, B. A.; Jungmann, R.: Imaging Ligand-Receptor Interactions at Single-Protein Resolution with DNA-PAINT. Small Methods, 2401799 (2025)

Stubhan, S.; Baptist, A. V.; Korosy, C.; Narducci, A.; Moya Munoz, G. G.; Wendler, N.; Lak, A.; Sztucki, M.; Cordes, T.; Lipfert, J.: Determination of absolute intramolecular distances in proteins using anomalous X-ray scattering interferometry. Nanoscale 17 (6), pp. 3322 - 3330 (2025)

Albrecht, V.; Müller-Reif, J. B.; Nordmann, T. M.; Mund, A.; Schweizer, L.; Geyer, P. E.; Niu, L.; Wang, J.; Post, F.; Oeller, M. et al.; Metousis, A.; Nielsen, A. B.; Steger, M.; Albrechtsen, N. J. W.; Mann, M.: Bridging the Gap From Proteomics Technology to Clinical Application: Highlights From the 68th Benzon Foundation Symposium. Molecular & Cellular Proteomics 23 (12), 100877 (2024)

Zinzula, L.; Beck, F.; Camasta, M.; Bohn, S.; Liu, C.; Morado, D.; Bracher, A.; Plitzko, J. M.; Baumeister, W.: Cryo-EM structure of single-layered nucleoprotein-RNA complex from Marburg virus. Nature Communications 15 (1), 10307 (2024)

Reimão-Pinto, M. M.; Behrens, A.; Forcelloni, S.; Fröhlich, K.; Kaya, S.; Nedialkova, D. D.: The dynamics and functional impact of tRNA repertoires during early embryogenesis in zebrafish. The EMBO Journal 43 (22), pp. 5747 - 5779 (2024)

Scott, D. C.; Chittori, S.; Purser, N.; King, M. T.; Maiwald, S. A.; Churion, K.; Nourse, A.; Lee, C.; Paulo, J. A.; Miller, D. J. et al.; Elledge, S. J.; Harper, J. W.; Kleiger, G.; Schulman, B. A.: Structural basis for C-degron selectivity across KLHDCX family E3 ubiquitin ligases. Nature Communications 15 (1), 9899 (2024)

Kögel, A.; Keidel, A.; Loukeri, M.-J.; Kuhn, C. C.; Langer, L. M.; Schäfer, I. B.; Conti, E.: Structural basis of mRNA decay by the human exosome–ribosome supercomplex. Nature 635 (8037), pp. 237 - 242 (2024)

Geyer, P. E.; Hornburg, D.; Pernemalm, M.; Hauck, S. M.; Palaniappan, K. K.; Albrecht, V.; Dagley, L. F.; Moritz, R. L.; Yu, X.; Edfors, F. et al.; Vandenbrouck, Y.; Mueller-Reif, J. B.; Sun, Z.; Brun, V.; Ahadi, S.; Omenn, G. S.; Deutsch, E. W.; Schwenk, J. M.: The Circulating Proteome-Technological Developments, Current Challenges, and Future Trends. Journal of Proteome Research 23 (12), pp. 5279 - 5295 (2024)

Nordmann, T. M.; Anderton, H.; Hasegawa, A.; Schweizer, L.; Zhang, P.; Stadler, P.-C.; Sinha, A.; Metousis, A.; Rosenberger, F. A.; Zwiebel, M. et al.; Satoh, T. K.; Anzengruber, F.; Strauss, M. T.; Tanzer, M. C.; Saito, Y.; Gong, T.; Thielert, M.; Kimura, H.; Silke, N.; Rodriguez, E.; Restivo, G.; Nguyen, H. H.; Gross, A.; Feldmeyer, L.; Joerg, L.; Levesque, M. P.; Murray, P. J.; Ingen-Housz-Oro, S.; Mund, A.; Abe, R.; Silke, J.; Ji, C.; French, L. E.; Mann, M.: Spatial proteomics identifies JAKi as treatment for a lethal skin disease. Nature 635 (8040), pp. 1001 - 1009 (2024)

Riedl, S.; Bilgen, E.; Agam, G.; Hirvonen, V.; Jussupow, A.; Tippl, F.; Riedl, M.; Maier, A.; Becker, C. F. W.; Kaila, V. R. I. et al.; Lamb, D. C.; Buchner, J.: Evolution of the conformational dynamics of the molecular chaperone Hsp90. Nature Communications 15, 8627 (2024)

Huang, J.; Jaekel, A.; van den Boom, J.; Podlesainski, D.; Elnaggar, M.; Heuer-Jungemann, A.; Kaiser, M.; Meyer, H.; Sacca, B.: A modular DNA origami nanocompartment for engineering a cell-free, protein unfolding and degradation pathway. Nature Nanotechnology 19 (10), pp. 1521 - 1531 (2024)

Massacci, G.; Venafra, V.; Zwiebel, M.; Wahle, M.; Cerroni, R.; Bissacco, J.; Perfetto, L.; Michienzi, V.; Stefani, A.; Mercuri, N. B. et al.; Schirinzi, T.; Sacco, F.: Stage-dependent phosphoproteome remodeling of Parkinson's disease blood cells. Neurobiology of Disease 200, 106622 (2024)

Weickert, P.; Dürauer, S.; Götz, M. J.; Li, H.-Y.; Stingele, J.: Electro-elution-based purification of covalent DNA–protein cross-links. Nature Protocols 19, pp. 2891 - 2914 (2024)

Yu, Z.; Baptist, A. V.; Reinhardt, S. C. M.; Bertosin, E.; Dekker, C.; Jungmann, R.; Heuer-Jungemann, A.; Caneva, S.: Compliant DNA origami nanoactuators as size-selective nanopores. Advanced Materials 36 (39), 2405104 (2024)