Student Publications

Albrecht, V.; Müller-Reif, J. B.; Nordmann, T. M.; Mund, A.; Schweizer, L.; Geyer, P. E.; Niu, L.; Wang, J.; Post, F.; Oeller, M. et al.; Metousis, A.; Nielsen, A. B.; Steger, M.; Albrechtsen, N. J. W.; Mann, M.: Bridging the Gap From Proteomics Technology to Clinical Application: Highlights From the 68th Benzon Foundation Symposium. Molecular & Cellular Proteomics 23 (12), 100877 (2024)

Zinzula, L.; Beck, F.; Camasta, M.; Bohn, S.; Liu, C.; Morado, D.; Bracher, A.; Plitzko, J. M.; Baumeister, W.: Cryo-EM structure of single-layered nucleoprotein-RNA complex from Marburg virus. Nature Communications 15 (1), 10307 (2024)

Reimão-Pinto, M. M.; Behrens, A.; Forcelloni, S.; Fröhlich, K.; Kaya, S.; Nedialkova, D. D.: The dynamics and functional impact of tRNA repertoires during early embryogenesis in zebrafish. The EMBO Journal 43 (22), pp. 5747 - 5779 (2024)

Scott, D. C.; Chittori, S.; Purser, N.; King, M. T.; Maiwald, S. A.; Churion, K.; Nourse, A.; Lee, C.; Paulo, J. A.; Miller, D. J. et al.; Elledge, S. J.; Harper, J. W.; Kleiger, G.; Schulman, B. A.: Structural basis for C-degron selectivity across KLHDCX family E3 ubiquitin ligases. Nature Communications 15 (1), 9899 (2024)

Kögel, A.; Keidel, A.; Loukeri, M.-J.; Kuhn, C. C.; Langer, L. M.; Schäfer, I. B.; Conti, E.: Structural basis of mRNA decay by the human exosome–ribosome supercomplex. Nature 635 (8037), pp. 237 - 242 (2024)

Geyer, P. E.; Hornburg, D.; Pernemalm, M.; Hauck, S. M.; Palaniappan, K. K.; Albrecht, V.; Dagley, L. F.; Moritz, R. L.; Yu, X.; Edfors, F. et al.; Vandenbrouck, Y.; Mueller-Reif, J. B.; Sun, Z.; Brun, V.; Ahadi, S.; Omenn, G. S.; Deutsch, E. W.; Schwenk, J. M.: The Circulating Proteome-Technological Developments, Current Challenges, and Future Trends. Journal of Proteome Research 23 (12), pp. 5279 - 5295 (2024)

Nordmann, T. M.; Anderton, H.; Hasegawa, A.; Schweizer, L.; Zhang, P.; Stadler, P.-C.; Sinha, A.; Metousis, A.; Rosenberger, F. A.; Zwiebel, M. et al.; Satoh, T. K.; Anzengruber, F.; Strauss, M. T.; Tanzer, M. C.; Saito, Y.; Gong, T.; Thielert, M.; Kimura, H.; Silke, N.; Rodriguez, E.; Restivo, G.; Nguyen, H. H.; Gross, A.; Feldmeyer, L.; Joerg, L.; Levesque, M. P.; Murray, P. J.; Ingen-Housz-Oro, S.; Mund, A.; Abe, R.; Silke, J.; Ji, C.; French, L. E.; Mann, M.: Spatial proteomics identifies JAKi as treatment for a lethal skin disease. Nature 635 (8040), pp. 1001 - 1009 (2024)

Riedl, S.; Bilgen, E.; Agam, G.; Hirvonen, V.; Jussupow, A.; Tippl, F.; Riedl, M.; Maier, A.; Becker, C. F. W.; Kaila, V. R. I. et al.; Lamb, D. C.; Buchner, J.: Evolution of the conformational dynamics of the molecular chaperone Hsp90. Nature Communications 15, 8627 (2024)

Huang, J.; Jaekel, A.; van den Boom, J.; Podlesainski, D.; Elnaggar, M.; Heuer-Jungemann, A.; Kaiser, M.; Meyer, H.; Sacca, B.: A modular DNA origami nanocompartment for engineering a cell-free, protein unfolding and degradation pathway. Nature Nanotechnology 19 (10), pp. 1521 - 1531 (2024)

Massacci, G.; Venafra, V.; Zwiebel, M.; Wahle, M.; Cerroni, R.; Bissacco, J.; Perfetto, L.; Michienzi, V.; Stefani, A.; Mercuri, N. B. et al.; Schirinzi, T.; Sacco, F.: Stage-dependent phosphoproteome remodeling of Parkinson's disease blood cells. Neurobiology of Disease 200, 106622 (2024)

Weickert, P.; Dürauer, S.; Götz, M. J.; Li, H.-Y.; Stingele, J.: Electro-elution-based purification of covalent DNA–protein cross-links. Nature Protocols 19, pp. 2891 - 2914 (2024)

Yu, Z.; Baptist, A. V.; Reinhardt, S. C. M.; Bertosin, E.; Dekker, C.; Jungmann, R.; Heuer-Jungemann, A.; Caneva, S.: Compliant DNA origami nanoactuators as size-selective nanopores. Advanced Materials 36 (39), 2405104 (2024)

Hellmeier, J.; Strauss, S.; Xu, S.; Masullo, L. A.; Unterauer, E. M.; Kowalewski, R.; Jungmann, R.: Quantification of absolute labeling efficiency at the single-protein level. Nature Methods 21 (9), pp. 1702 - 1707 (2024)

Schiotz, O. H.; Kaiser, C. J. O.; Klumpe, S.; Morado, D. R.; Poege, M.; Schneider, J.; Beck, F.; Klebl, D. P.; Thompson, C.; Plitzko, J. M.: Serial Lift-Out: Sampling the molecular anatomy of whole organisms. Nature Methods 21 (9), pp. 1684 - 1692 (2024)

Steen, P. R.; Unterauer, E. M.; Masullo, L. A.; Kwon, J.; Perovic, A.; Jevdokimenko, K.; Opazo, F.; Fornasiero, E. F.; Jungmann, R.: The DNA-PAINT palette: A comprehensive performance analysis of fluorescent dyes. Nature Methods 21 (9), pp. 1755 - 1762 (2024)

Jayakrishnan, M.; Havlová, M.; Veverka, V.; Regnard, C.; Becker, P.: Genomic context-dependent histone H3K36 methylation by three Drosophila methyltransferases and implications for dedicated chromatin readers. Nucleic Acids Research 52 (13), pp. 7627 - 7649 (2024)

Bérouti, M.; Lammens, K.; Heiss, M.; Hansbauer, L.; Bauernfried, S.; Stöckl, J.; Pinci, F.; Piseddu, I.; Greulich, W.; Wang, M. et al.; Jung, C.; Fröhlich, T.; Carell, T.; Hopfner, K.-P.; Hornung, V.: Lysosomal endonuclease RNase T2 and PLD exonucleases cooperatively generate RNA ligands for TLR7 activation. Immunity 57 (7), pp. 1482 - 1496 (2024)

Horn-Ghetko, D.; Hopf, L. V. M.; Tripathi-Giesgen, I.; Du, J.; Kostrhon, S.; Tung Vu, D.; Beier, V.; Steigenberger, B.; Prabu, J. R.; Stier, L. et al.; Bruss, E. M.; Mann, M.; Xiong, Y.; Schulman, B. A.: Noncanonical assembly, neddylation and chimeric cullin-RING/RBR ubiquitylation by the 1.8 MDa CUL9 E3 ligase complex. Nature Structural & Molecular Biology 31 (7), pp. 1083 - 1094 (2024)

Lyu, X.; Fan, B.; Hüser, M.; Hartout, P.; Gumbsch, T.; Faltys, M.; Merz, T. M.; Rätsch, G.; Borgwardt, K.: An empirical study on KDIGO-defined acute kidney injury prediction in the intensive care unit. Bioinformatics 40 (Suppl. 1), pp. i247 - i256 (2024)

Todesca, S.; Sandmeir, F.; Keidel, A.; Conti, E.: Molecular basis of human polyA polymerase recruitment by mPSF. RNA: A Publication of the RNA Society 30 (7), pp. 795 - 806 (2024)