Publications of Chanchal Kumar

Oppermann, F. S.; Grundner-Culemann, K.; Kumar, C.; Gruss, O. J.; Jallepalli, P. V.; Daub, H.: Combination of Chemical Genetics and Phosphoproteomics for Kinase Signaling Analysis Enables Confident Identification of Cellular Downstream Targets. Molecular and Cellular Proteomics, 11.4 (2012)

Soufi, B.; Kumar, C.; Gnad, F.; Mann, M.; Mijakovic, I.; Macek, B.: Stable Isotope Labeling by Amino Acids in Cell Culture (SILAC) Applied to Quantitative Proteomics of Bacillus subtilis. Journal of Proteome Research 9 (7), pp. 3638 - 3646 (2010)

Sharma, K.; Kumar, C.; Keri, G.; Breitkopf, S. B.; Oppermann, F. S.; Daub, H.: Quantitative Analysis of Kinase-Proximal Signaling in Lipopolysaccharide-Induced Innate Immune Response. Journal of Proteome Research 9 (5), pp. 2539 - 2549 (2010)

Olsen, J. V.; Vermeulen, M.; Santamaria, A.; Kumar, C.; Miller, M. L.; Jensen, L. J.; Gnad, F.; Cox, J.; Jensen, T. S.; Nigg, E. A. et al.; Brunak, S.; Mann, M.: Quantitative Phosphoproteomics Reveals Widespread Full Phosphorylation Site Occupancy During Mitosis. Science Signaling 3 (104), ra3, pp. [1] - [15] (2010)

Waanders, L. F.; Chwalek, K.; Monetti, M.; Kumar, C.; Lammert, E.; Mann, M.: Quantitative proteomic analysis of single pancreatic islets. Proceedings of the National Academy of Sciences of the United States of America 106 (45), pp. 18902 - 18907 (2009)

Forner, F.; Kumar, C.; Luber, C. A.; Fromme, T.; Klingenspor, M.; Mann, M.: Proteome Differences between Brown and White Fat Mitochondria Reveal Specialized Metabolic Functions. Cell Metabolism 10 (4), pp. 324 - 335 (2009)

Soufi, B.; Olsen, J. V.; Gnad, F.; Kumar, C.; Mann, M.; Mijakovic, I.; Macek, B.: Organization and dynamics of the bacterial Ser/Thr/Tyr phosphoproteome. Amino Acids 37 (4), p. 763 - 763 (2009)

Choudhary, C.; Kumar, C.; Gnad, F.; Nielsen, M. L.; Rehman, M.; Walther, T. C.; Olsen, J. V.; Mann, M.: Lysine Acetylation Targets Protein Complexes and Co-Regulates Major Cellular Functions. Science 325 (5942), pp. 834 - 840 (2009)

Kumar, C.; Mann, M.: Bioinformatics analysis of mass spectrometry-based proteomics data sets. FEBS Letters 583 (11), pp. 1703 - 1712 (2009)

Pan, C. P.; Kumar, C.; Bohl, S.; Klingmueller, U.; Mann, M.: Comparative Proteomic Phenotyping of Cell Lines and Primary Cells to Assess Preservation of Cell Type-specific Functions. Molecular & Cellular Proteomics 8 (3), pp. 443 - 450 (2009)

Bonaldi, T.; Straub, T.; Cox, J.; Kumar, C.; Becker, P. B.; Mann, M.: Combined use of RNAi and quantitative proteomics to study gene function in Drosophila. Molecular Cell 31 (5), pp. 762 - 772 (2008)

Graumann, J.; Hubner, N. C.; Kim, J.B.; Ko, K.; Moser, M.; Kumar, C.; Cox, J.; Schöler, H.; Mann, M.: SILAC-labeling and proteome quantitation of mouse embryonic stem cells to a depth of 5111 proteins. Special Issue: 8th International Symposium On Mass Spectrometry In The Life Sciences, pp. 672 - 683 (2008)

Graumann, J.; Hubner, N. C.; Kim, J. B.; Ko, K.; Moser, M.; Kumar, C.; Cox, J.; Schöler, H.; Mann, M.: Stable Isotope Labeling by Amino Acids in Cell Culture (SILAC) and proteome quantitation of mouse embryonic stem cells to a depth of 5,111 proteins. Molecular & Cellular Proteomics 7 (4), pp. 672 - 683 (2008)

Zougman, A.; Pilch, B.; Podtelejnikov, A.; Kiehntopf, M.; Schnabel, C.; Kumar, C.; Mann, M.: Integrated analysis of the cerebrospinal fluid peptidome and proteome. Journal of Proteome Research 7 (1), pp. 386 - 399 (2008)

Macek, B.; Gnad, F.; Soufi, B.; Kumar, C.; Olsen, J. V.; Mijakovi, I.; Mann, M.: Phosphoproteome Analysis of E. coli Reveals Evolutionary Conservation of Bacterial Ser/Thr/Tyr Phosphorylation. Molecular & Cellular Proteomics 7 [2008] (2), pp. 299 - 307 (2007)

de Godoy, L.; Cox, J.; Olsen, J.; Bonaldi, T.; Kumar, C.; Hubner, N.; Macek, B.; Mann, M.: Expression proteomics at last; the determination of Proteome wide protein abundance changes by SILAC and high resolution mass Spectrometry. Molecular & Cellular Proteomics 6 (8 (Supplement)), 1.1, p. 18 - 18 (2007)

Shi, R.; Kumar, C.; Zougman, A.; Zhang, Y.; Podtelejnikov, A.; Cox, J.; Wisniewski, J. R.; Mann, M.: Analysis of the mouse liver proteome using advanced mass spectrometry. Journal of Proteome Research 6 (8), pp. 2963 - 2972 (2007)

Adachi, J.; Kumar, C.; Zhang, Y. L.; Mann, M.: In-depth analysis of the adipocyte proteome by mass spectrometry and bioinformatics. Molecular & Cellular Proteomics 6 (7), pp. 1257 - 1273 (2007)

Macek, B.; Mijakovic, I.; Olsen, J. V.; Gnad, F.; Kumar, C.; Jensen, P.R.; Mann, M.: The Serine/Threonine/Tyrosine Phosphoproteome of the Model Bacterium Bacillus subtilis. Molecular & Cellular Proteomics 6 (4), pp. 697 - 707 (2007)

Zhang, Y. L.; Zhang, Y.; Adachi, J.; Olsen, J. V.; Shi, R.; de Souza, G.; Pasini, E.; Foster, L. J.; Macek, B.; Zougman, A. et al.; Kumar, C.; Wisniewski, J. R.; Jun, W.; Mann, M.: MAPU: Max-Planck Unified database of organellar, cellular, tissue and body fluid proteomes. Nucleic Acids Research 35 (Sp. Iss. Sp. Iss. SI), pp. D771 - D779 (2007)